ÖZGEÇMİŞ. Derece Alan Üniversite Yıl Lisans Matematik Ortadoğu Teknik Üniversitesi 2002 Y. Lisans Uygulamalı

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1 ÖZGEÇMİŞ 1. Adı Soyadı: Süreyya Akyüz 2. Doğum Tarihi: 3. Unvanı: Yrd. Doç. Dr. 4. Öğrenim Durumu: Derece Alan Üniversite Yıl Lisans Matematik Ortadoğu Teknik Üniversitesi 2002 Y. Lisans Uygulamalı Ortadoğu Teknik Üniversitesi 2005 Matematik/Bilimsel Hesaplama Doktora Uygulamalı Matematik/Bilimsel Hesaplama Ortadoğu Teknik Üniversitesi Akademik Unvanlar: Yardımcı Doçentlik Tarihi : 19 Ekim 2009 Doçentlik Tarihi : Profesörlük Tarihi : 6. Yönetilen Yüksek Lisans ve Doktora Tezleri 6.1. Yüksek Lisans Tezleri Gülnur Şahin, Ters Network Modellerinin Öbekleme ile Indirgenmesi ve Patojen Konak Sistem Biyolojisine Uygulanmasi İrem Karaduman, Patojen Konak Sistem Biyolojisinin Ters Network Akis Algoritmalari ile Matematiksel Modellenmesi 6.2. Doktora Tezleri 7. Yayınlar 7.1. Uluslararası hakemli dergilerde yayınlanan makaleler (SCI & SSCI & Arts and Humanities) A1. A. Akyüz, T. Yurdun, Z. Pelin, S. Özöğür and O. Ercan, Serum Copper and Zinc Status in Obstructive Sleep Apnea Patients, Journal of Sleep Research, published on behalf of the European Sleep Research Society September Vol. 15 Issue s1 Page v-281. (Abstract Published in Refereed Journal) 1

2 A2. G.-W. Weber, P. Taylan, Z. Alparslan-Gök, S. Özöğür-Akyüz and B. Akteke-Öztürk, Optimization of gene-environment networks in the presence of errors and uncertainty with Chebychev approximation, in TOP, the Operational Research journal of SEIO (Spanish Statistics and Operations Research Society) 16, 2 (2008) A3. S. Özöğür-Akyüz, and G.-W. Weber, Infinite Kernel Learning via infinite and semi-infinite programming, in the special issue of OMS (Optimization Methods and Software) at the occasion of International Conference on Engineering Optimization (EngOpt 2008; Rio de Janeiro, Brazil, June 1-5, 2008), K. Schittkowski (guest ed.), Volume 25 Issue 6, pp , A4. S. Özöğür, J. Shawe-Taylor, G.-W. Weber and Z.B. Ögel, Pattern Analysis for the Prediction of Eukoryatic Pro-peptide Cleavage Sites, Discrete Applied Mathematics (DAM), Volume 157, Issue 10, 28 May 2009, pp A5. S. Özöğür-Akyüz, Z. Hussain and J. Shawe-Taylor, Prediction with the SVM using test point margins, Annals of Information Systems, 2010, Volume 8, Part 3, , DOI: / _7. A6. G.-W. Weber, S. Özöğür -Akyüz and E. Kropat, A review on data mining and continuous optimization applications in computational biology and medicine, in Embryo Today, Birth Defects Research (Part C) 87 (2009) pp A7. S. Özöğür-Akyüz, and G.-W. Weber, On Numerical Optimization theory of Infinite Kernel Learning, Journal of Global Optimization, 48, Issue 2 (2010), Page , A8. G. Üstünkar, S. Özöğür-Akyüz, G.-W. Weber, Y. Aydın Son, C. M, Friedrich, Selection of to Representative SNP Sets for Genome-Wide Association Studies: A Metaheuristic Approach, Online First DOI: /s , Optimization Letters, A9. Ozogur-Akyuz, S., Unay, D., Smola, A., Special Issue, Guest Editorial: model selection and optimization in machine learning, Machine Learning, 85 (1-2), 1-2, Uluslararası diğer hakemli dergilerde yayınlanan makaleler 7.3. Uluslararası bilimsel toplantılarda sunulan ve bildiri kitabında (Proceedings) basılan bildiriler A10. S. Özöğür, G.-W. Weber and J. Shawe-Taylor, Biological Data Mining by Using SVM and Pattern Analysis, in EURO XXI, 21st European Conference on Operational Research, Iceland, 2-5 July 2006, pp. 49 (abstract). 2

3 A11. A. Akyüz, T. Yurdun, Z. Pelin, S. Özöğür and O. Ercan, Serum Copper and Zinc Status in Obstructive Sleep Apnea Patients, (poster) in 8th Congress of the European Sleep Research Society, Innsbruck, Austria, September 12-16, A12. S. Özöğür, Z. Hussain, and J. Shawe-Taylor, Model Selection via Test Margin, in EURO XXII European Conference on Operational Research, Prague, July, 2007, pp. 236 (abstract). A13. S. Özöğür-Akyüz and G.-W. Weber, Learning with Infinitely Many Kernels via Semi- Infinite Programming, In ISI Proceedings of Euro Mini Conference on Continuous Optimization and Knowledge Based Technologies, ISBN: ,Vilnius Gediminas Technical University Publishing House Technika, 2008, pp A14. S. Özögür-Akyüz, B. Akteke-Öztürk, T. Tchemisova and G.-W. Weber, New optimization methods in data mining, in Operations Research Proceedings, Conference 2008, Fleischmann, B.; Borgwardt, K.H.; Klein, R.; Tuma, A. (Eds.), XX, ISBN: , Springer Verlag, 2009, pp A15. S. Özöğür-Akyüz and G.-W. Weber, Infinite kernel learning by infinite and semi-infinite programming, Proceedings of the Second Global Conference on Power Control and Optimization, AIP Conference Proceedings 1159, Conference Location and Date: Bali, Indonesia, 1-3 June 2009, Subseries: Mathematical and Statistical Physics; ISBN (August 2009) ; A.H. Hakim, P. Vasant and N. Barsoum, guest eds.. A16. S. Özöğür-Akyüz and T. Windeatt, On New Model Selection Methods for Error Correcting Output Codes (ECOC), in 23rd European Conference on Operational Research, in session Multi-View Learning in Machine Learning, Bonn, Germany, July 5-8, 2009, pp. 275 (abstract). A17. B. Kaymakoğlu, A. Akyüz, S. Özöğür-Akyüz, N. Baykal and F. Özgen, Data Mining and Knowledge Discovery studies in psychophysiological and paradoxical sleep apnea patients, in 23 rd European Conference on Operational Research, in session Data Mining and Healthcare Informatics, Bonn, Germany, July 5-8, 2009, pp. 298 (abstract). A18. Unay, D., Soldea, O., Ozogur-Akyuz, S., Cetin, M., Ercil, A., Medical Image Retrieval and Automatic Annotation: VPA-SABANCI at ImageCLEF 2009, Proc. of Cross-Language Evaluation Forum (CLEF) Workshop in conjunction with ECDL 09, Corfu - Greece, A19. G. Üstünkar, S. Özöğür -Akyüz and G.-W. Weber, SNP-Complex Disease Association by Simulated Annealing Approach, extended abstract, 8th International Conference on Optimization: Techniques and Applications (ICOTA8), Shanghai, China, December 10-13,

4 A.20. U. Akyüz, O. Yazici, O. Kilic, G. Akturk, E. Mert, B. Uzunlu, B. Ozturk, S. Ozogur-Akyuz, Online web based solution for environmental sustainable development, In Proceedings of 24 th European Conference on Operational Research (EURO XXI), pp 14, A21. G. Üstünkar, S. Özöğür-Akyüz, G.W-Weber, N. Baykal, Application of advanced machine learning methods for tag snp selection in complex disease association studies, In Proceedings of 24 th European Conference on Operational Research (EURO XXI), pp 35, A22. S. Özöğür-Akyüz, G.W.-Weber, Adapted Infinite Kernel Learning by Multi-Local Algorithm, In Proceedings of 24 th European Conference on Operational Research (EURO XXI), pp. 78, 2010 A23. G. Ustünkar, S. Özöğür- Akyüz, G.-W. Weber and Y.A. Aydin Son, Analysis of SNP-complex disease association by a novel feature selection method, in Operations Research Proceedings 2010, Selected Papers of the Annual International Conference of the German Operation Research Society, B. Hu, K. Morasch, S. Pickl and M. Siegle, eds., Springer, Berlin, Heidelberg, 2011, Yazılan uluslararası kitaplar veya kitaplarda bölümler A24. S. Özöğür-Akyüz, Mathematical Modelling of Enzymatic Reactions: Simulation and Parameter Estimation by Genetic Algorithm, VDM Verlag Dr. Müller Aktiengesellschaft & Co. KG, Saarbrücken, Germany, A25. S. Özöğür-Akyüz, Infinite Kernel Learning by Semi-infinte Optimization: Integrated with New Model Selection Algorithm, LAP LAMBERT Academic Publishing, ISBN-13: , Ulusal hakemli dergilerde yayınlanan makaleler 7.6. Ulusal bilimsel toplantılarda sunulan ve bildiri kitabında basılan bildiriler B1. S. Özöğür, A.G. Sağdıçoğlu Celep, B. Karasözen, N. Yıldırım and G.-W. Weber, Dynamical modelling of enzymatic reactions, simulation and parameter estimation with genetic algorithms. In: HIBIT proceedings of International Symposium on Health Informatics and Bioinformatics, Turkey 05, Antalya, Turkey, November, 2005, pp B2. A. Akyüz, T. Yurdun, Z. Pelin and S. Özöğür, Serum Zinc and Copper Level Determination in Obstructive Sleep Apnea Patients, in 6th IC-TST; 6th International Congress of Turkish Society of Toxicology Chemical Safety and Toxicology, Antalya, Turkey, 2-5 November, 2006, pp. 140 (abstract). 4

5 B3. S. Özöğür-Akyüz, A.Ö. Argunşah, A. Akyüz and T. Windeatt, Sleep Stage Classification using ECOC, (poster) in 4th International Symposium on Health Informatics and Bioinformatics (HIBIT), Ankara, Turkey, April 16-17, B4. S. Özöğür-Akyüz, C. Zor and G. Ünal, Plague classification in ultrasound images via multiclass classification with Error Correcting Output Codes (ECOC), presented (oral presentation) in Istanbul Conference on Mathematical Methods and Modeling in Life Sciences and Biomedicine 2009 (ICMMM- LSBM), Sile, Istanbul, 2009 (abstract). B5. G. Üstünkar, S. Özöğür-Akyüz, U. Sezerman, G.-W. Weber and N. Baykal, Application of Advanced Machine Learning Methods For SNP Discovery in Complex Disease Association Studies, in Proceedings of International Congress on Computational and Applied Mathematics (ICCAM), Antalya, Spetember 2009 (abstract). B6. S. Özöğür-Akyüz, G. Üstünkar and G.-W. Weber, On Numerical Optimization Methods for Infinite Kernel Learning, in Proceedings of International Congress on Computational and Applied Mathematics (ICCAM), Antalya, September 2009 (abstract). B7. G.-W. Weber, P. Taylan, S. Özöğür and B. Akteke-Öztürk, Statistical learning and optimization methods in data mining, in: Recent Advances in Statistics, eds.: H.Ö. Ayhan and I. Batmaz, Turkish Statistical Institute Press, Ankara, at the occasion of Graduate Summer School on New Advances in Statistics (August 2007) Diğer yayınlar 8. Projeler A1. Proje başlığı: EU7 SICA Collaborative Project (small or medium-scaled focused research project) with focus on Eastern Europe and Central Asia Proje konusu/alanı: New Algorithms for Host Pathogen Systems Biology / Bioinformatik Destekleyen kuruluş: Avrupa Birliği 7. Çerçeve Projenin başlangıç ve bitiş yılları: 2010 Ekim Ekim 5

6 A2. Proje başlığı: EU7 Marie Curie Intra European Fellowship Proje konusu/alanı: Mathematical Modelling of Ensemble Classifier Systems Via Optimization of Divergence-Accuracy Trade off / Optimizasyon Destekleyen kuruluş: Avrupa Birliği 7. Çerçeve Projenin başlangıç ve bitiş yılları: 2011 Mart Mart 9. İdari Görevler 10. Bilimsel ve Mesleki Kuruluşlara Üyelikler EUROPT - The Continuous Optimization Working Group of EURO ( ) SIAM - Society of Industrial and Applied Mathematics Computational Biology and Medicine Group, Institute of Applied Mathematics, Middle East Technical University ( PASCAL - Pattern Analysis, Statistical Modelling and Computational Learning ( 11. Ödüller PASCAL funding for collaboration of scientific visit to UCL with John Shawe-Taylor. Microsoft Imagine Cup award in Software category, became third in Turkey finals, students: Unal Akyuz, Gizem Akturk, Onur Yazici, Okan Kilic, mentored by Sureyya Ozogur-Akyuz, 2010 In the shortlist of among three finalist of EURO 24 th International Conference on Operational Research, PhD Dissertation Award 2010 Microsoft Imagine Cup Turkey finalist in Software category,students: Unal Akyuz, Gizem Akturk, Onur Yazici, Okan Kilic, mentored by Sureyya Ozogur-Akyuz, 2011 Microsoft Imagine Cup Grants 2011, listed in the first 15 in worldwide,

7 12. Son iki yılda verdiğiniz lisans ve lisansüstü düzeydeki dersler için aşağıdaki tabloyu doldurunuz. Akademik Haftalık Saati Öğrenci Dönem Dersin Adı Yıl Teorik Uygulama Sayısı Introduction to Probability and Yaz Statistics (Sabancı Üniversitesi) Güz Linear Algebra with Matlab (Bahçeşehir Üniversitesi) İlkbahar İlkbahar Lineer Algebra with Matlab (Bahçeşehir Üniversitesi) Numerical Optimization(Yüksek lisans, Bahçeşehir Üniversitesi) Güz Güz Lineer Algebra with Matlab (Bahçeşehir Üniversitesi) Differential Equations Not: Açılmışsa, yaz döneminde verilen dersler de tabloya ilave edilecektir. 7